Using Petri Net tools to study properties and dynamics of biological systems.
Petri Nets (PNs) and their extensions are promising methods for modeling and simulating biological systems. We surveyed PN formalisms and tools and compared them based on their mathematical capabilities as well as by their appropriateness to represent typical biological processes. We measured the ability of these tools to model specific features of biological systems and answer a set of biological questions that we defined. We found that different tools are [...]
Author(s): Peleg, Mor, Rubin, Daniel, Altman, Russ B
DOI: 10.1197/jamia.M1637